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<title>Ignacio Spiousas</title>
<link>https://spiousas.github.io/en/blog.html</link>
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<description>Behavioural neuroscience, circadian rhythms and statistics with R.</description>
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<lastBuildDate>Fri, 16 Oct 2026 00:00:00 GMT</lastBuildDate>
<item>
  <title>A blog for the things that don’t fit in a paper</title>
  <dc:creator>Ignacio Spiousas</dc:creator>
  <link>https://spiousas.github.io/en/posts/welcome/</link>
  <description><![CDATA[ 





<p>There is a category of knowledge that accumulates as you work and never makes it into a paper: why that mixed model will not converge, how to actually read a periodogram, what <code>scale()</code> does to your coefficients, the least painful way to plot confidence intervals. This blog is for that.</p>
<section id="what-i-will-write-about" class="level2">
<h2 class="anchored" data-anchor-id="what-i-will-write-about">What I will write about</h2>
<ul>
<li><strong>R and the tidyverse</strong> — patterns I use every day, and the ones I abandoned.</li>
<li><strong>Applied statistics</strong> — inference, mixed models, periodic data analysis, and the misunderstandings I see repeated in practice.</li>
<li><strong>Visualisation</strong> — <code>ggplot2</code>, design decisions, and plots that communicate.</li>
<li><strong>Workflow</strong> — reproducible projects, Quarto, version control.</li>
</ul>
<p>The aim is for each post to be short, self-contained, and to carry code you can copy and run.</p>
</section>
<section id="how-this-site-is-built" class="level2">
<h2 class="anchored" data-anchor-id="how-this-site-is-built">How this site is built</h2>
<p>The site is written in <a href="https://quarto.org">Quarto</a> and published with GitHub Pages. Every post is a <code>.qmd</code> file, so text and code live together and results are generated at render time:</p>
<div class="code-copy-outer-scaffold"><div class="sourceCode" id="cb1" style="background: #f1f3f5;"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">library</span>(tidyverse)</span>
<span id="cb1-2"></span>
<span id="cb1-3"><span class="co" style="color: #5E5E5E;
background-color: null;
font-style: inherit;"># An example of what tends to show up around here</span></span>
<span id="cb1-4"><span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">tibble</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">t =</span> <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">seq</span>(<span class="dv" style="color: #AD0000;
background-color: null;
font-style: inherit;">0</span>, <span class="dv" style="color: #AD0000;
background-color: null;
font-style: inherit;">4</span> <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">*</span> pi, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">length.out =</span> <span class="dv" style="color: #AD0000;
background-color: null;
font-style: inherit;">200</span>)) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">|&gt;</span></span>
<span id="cb1-5">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">mutate</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">signal =</span> <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">sin</span>(t) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">+</span> <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">rnorm</span>(<span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">n</span>(), <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">sd =</span> <span class="fl" style="color: #AD0000;
background-color: null;
font-style: inherit;">0.2</span>)) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">|&gt;</span></span>
<span id="cb1-6">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">ggplot</span>(<span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">aes</span>(t, signal)) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">+</span></span>
<span id="cb1-7">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">geom_line</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">linewidth =</span> <span class="fl" style="color: #AD0000;
background-color: null;
font-style: inherit;">0.4</span>, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">colour =</span> <span class="st" style="color: #20794D;
background-color: null;
font-style: inherit;">"grey60"</span>) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">+</span></span>
<span id="cb1-8">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">geom_smooth</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">method =</span> <span class="st" style="color: #20794D;
background-color: null;
font-style: inherit;">"loess"</span>, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">formula =</span> y <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">~</span> x, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">se =</span> <span class="cn" style="color: #8f5902;
background-color: null;
font-style: inherit;">FALSE</span>, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">colour =</span> <span class="st" style="color: #20794D;
background-color: null;
font-style: inherit;">"#1d6a73"</span>) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">+</span></span>
<span id="cb1-9">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">labs</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">x =</span> <span class="st" style="color: #20794D;
background-color: null;
font-style: inherit;">"Time"</span>, <span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">y =</span> <span class="st" style="color: #20794D;
background-color: null;
font-style: inherit;">"Signal"</span>) <span class="sc" style="color: #5E5E5E;
background-color: null;
font-style: inherit;">+</span></span>
<span id="cb1-10">  <span class="fu" style="color: #4758AB;
background-color: null;
font-style: inherit;">theme_minimal</span>(<span class="at" style="color: #657422;
background-color: null;
font-style: inherit;">base_size =</span> <span class="dv" style="color: #AD0000;
background-color: null;
font-style: inherit;">12</span>)</span></code></pre></div></div>
<p>One advantage of this setup: results are <em>frozen</em> (<code>freeze: true</code>), so the server that publishes the site does not need R installed. Code runs only when I change a post.</p>
</section>
<section id="coming-up" class="level2">
<h2 class="anchored" data-anchor-id="coming-up">Coming up</h2>
<p>I have a few notes queued on periodic data analysis, which is where I spend most of my time. If there is something you would like to read, write to me on <a href="https://github.com/spiousas">GitHub</a> or <a href="https://x.com/spiousas">X</a>.</p>


</section>

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  <guid>https://spiousas.github.io/en/posts/welcome/</guid>
  <pubDate>Fri, 16 Oct 2026 00:00:00 GMT</pubDate>
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